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Background Information of CDK9-IN-12

CDK9-IN-12 (Compound 17) is a highly selective and potent CDK9 kinase inhibitor with an IC50 of 0.084±0.008 μM. CDK9 is a key regulator of transcription elongation in eukaryotic cells and has been considered as a potential drug target for several diseases including cardiac hypertrophy and certain cancers such as a variety of blood cancers as well as solid tumors.

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Mechanism and Indications

Signaling Pathways Cell Cycle/DNA Damage
Target CDK
Research Area Cancer

Clinical Information

Product Name Sponsor & Collaborators Indications Start Date End Date Phase

Chemical Information

M.Wt Formula CAS No. Synonyms
436.01 C21H30ClN5OS Compound 17

Structure Information of CDK9-IN-12

Smiles S1C=C(C2C(Cl)=CN=C(NC[[email protected]@H]3CC[[email protected]@H](N)CC3)C=2)N=C1NCC1CCOCC1 |&1:11,14|
InChI InChI=1S/C21H30ClN5OS/c22-18-12-25-20(24-10-14-1-3-16(23)4-2-14)9-17(18)19-13-29-21(27-19)26-11-15-5-7-28-8-6-15/h9,12-16H,1-8,10-11,23H2,(H,24,25)(H,26,27)/t14-,16-

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CDK9-IN-6 1391855-95-0 C27H37ClN6O2 5
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LEE011 (hydrochloride) 1211443-80-9 C23H31ClN8O 8
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WHI-P180 211555-08-7 C16H15N3O3 13
THZ1 1604810-83-4 C31H28ClN7O2 18
Senexin A 1366002-50-7 C17H14N4 8
CDK4-IN-1 1256963-02-6 C22H29ClN8 9
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Purvalanol B 212844-54-7 C20H25ClN6O3 22

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Chemical and Physical Properties

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[1].Beilei Wang, et al. Discovery of 4-(((4-(5-chloro-2-(((1s,4s)-4-((2-methoxyethyl)amino)cyclohexyl)amino)pyridin-4-yl)thiazol-2-yl)amino)methyl)tetrahydro-2H-pyran-4-carbonitrile (JSH-150) as a novel highly selective and potent CDK9 kinase inhibitor. Eur J Med Chem. 13 September 2018.
Through a structure-guided rational drug design approach, we have discovered a highly selective inhibitor compound 40 (JSH-150), which exhibited an IC50 of 1 nM against CDK9 kinase in the biochemical assay and achieved around 300–10000-fold selectivity over other CDK kinase family members. In addition, it also displayed high selectivity over other 468 kinases/mutants (KINOMEscan S score(1) = 0.01). Compound 40 displayed potent antiproliferative effects against melanoma, neuroblastoma, hepatoma, colon cancer, lung cancer as well as leukemia cell lines. It could dose-dependently inhibit the phosphorylation of RNA Pol II, suppress the expression of MCL-1 and C-Myc, arrest the cell cycle and induce the apoptosis in the leukemia cells. In the MV4-11 cell-inoculated xenograft mouse model, 10 mg/kg dosage of 40 could almost completely suppress the tumor progression. The high selectivity and good in vivo PK/PD profile suggested that 40 would be a good pharmacological tool to study CDK9-mediated physiology and pathology as well as a potential drug candidate for leukemia and other cancers.

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